NHLBI BioData Catalyst® Powered by PIC-SURE
  • NHLBI BioData Catalyst® Powered by PIC-SURE User Guide
    • Frequently Asked Questions
  • Introduction to PIC-SURE
    • General Layout
    • Browse vs. Explore
  • Browse
    • Browse All Data
    • Features of Browse
  • Explore
    • Log in to Explore
    • Features of Explore
      • Prepare for Analysis
      • PFB Handoff to BioData Catalyst Powered by Terra
    • Manage Datasets
  • Data in PIC-SURE
    • Data Organization in BDC-PIC-SURE
      • BDC-PIC-SURE Data Format
    • Available Data & Managing Data Access
      • Publicly Available Datasets
      • TOPMed and TOPMed Related Datasets
        • Harmonized Data (TOPMed DCC Harmonized Clinical Variables)
      • BioLINCC Datasets
      • CONNECTS Datasets
  • Prepare for Data Analysis Using the PIC-SURE API
    • What is the PIC-SURE API?
    • PIC-SURE Personal Access Token
    • Analysis in the BioData Catalyst Ecosystem
      • BDC Powered by Seven Bridges
      • BDC Powered by Terra
    • Data Dictionaries via PIC-SURE API
    • More information about the PIC-SURE API
  • Citation and Acknowledgement of BioData Catalyst
  • Release Notes
    • Release Notes
      • 2025 May 8 Release
      • 2025 April 3 Release
      • 2025 March 5 Release
      • 2025 February 10 Release
      • 2024 Release Notes
        • 2024 December 19 Release
        • 2024 November 21 Release
        • 2024 November 4 Release
        • 2024 October 3 Release
        • 2024 September 5 Release
        • 2024 August 20 Release
        • 2024 August 1 Release
        • 2024 June 18 Release
        • 2024 May 29/30 Release
        • 2024 May 10/14 Release
        • 2024 March 26/28 Release
        • 2024 February 20/22 Release
        • 2024 January 30/31
        • 2024 January 16 Release
        • 2024 June 27 Release
      • 2023 Release Notes
        • 2023 December 12/14 Release
        • 2023 November 17 Release
        • 2023 October 23/31 Releases
        • 2023 October 13 Release
        • 2023 October 6 Release
        • 2023 September 28 Release
        • 2023 August 29 Release
        • 2023 July 27 Release
        • 2023 May 25 Release
        • 2023 March 30 Release
        • 2023 January 26 Release
  • Video Tutorials
    • Introduction to BioData Catalyst Powered by PIC-SURE
    • Basics: Finding Variables
    • Basics: Applying a Filter on a Variable
    • Basics: Editing a Variable Filter
    • PIC-SURE Open Access: Interpreting the Results
    • PIC-SURE Authorized Access: Add Variables to Export
    • PIC-SURE Authorized Access: Applying a Genomic Filter
    • PIC-SURE Authorized Access: Variable Distributions Tool
    • PIC-SURE Open Application Programming Interface (API)
  • Appendix
    • Glossary
    • Appendix 1: BDC Identifiers - dbGaP, TOPMed, and PIC-SURE
    • Appendix 2: Table of TOPMed DCC Harmonized Variables in PIC-SURE
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  1. Prepare for Data Analysis Using the PIC-SURE API

What is the PIC-SURE API?

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Last updated 7 months ago

Accessing and managing data across various types and formats can be challenging. The Patient-Centered Information Commons: Standardized Unification of Research Elements (PIC-SURE) is a tool designed to address this challenge by simplifying the exploration and use of diverse data.

PIC-SURE integrates different data types at the participant level, allowing researchers to define inclusion criteria across these diverse data types. This means researchers can combine phenotypic and genomic queries to filter and identify a specific group of participants.

PIC-SURE is available via an Application Programming Interface (API), allowing researchers to use code to search for variables, apply inclusion criteria, and export data. The PIC-SURE API is available in both R and Python, providing flexibility based on the researcher’s needs.

Based on the coding language, the data will be exported as a Python or R data frame. This format allows researchers to kickstart their analysis by applying statistical and analytical functions or packages on this exported data frame.

Go to the Prepare for Analysis tab on BDC-PIC-SURE to learn more about the PIC-SURE API and access additional documentation.

Access-to-Data-using-PIC-SURE-API/NHLBI_BioData_Catalyst at master · hms-dbmi/Access-to-Data-using-PIC-SURE-APIGitHub
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