NHLBI BioData Catalyst® Powered by PIC-SURE
  • NHLBI BioData Catalyst® Powered by PIC-SURE User Guide
    • Frequently Asked Questions
  • Introduction to PIC-SURE
    • General Layout
    • Browse vs. Explore
  • Browse
    • Browse All Data
    • Features of Browse
  • Explore
    • Log in to Explore
    • Features of Explore
      • Prepare for Analysis
      • PFB Handoff to BioData Catalyst Powered by Terra
      • PFB Handoff to BioData Catalyst Powered by Seven Bridges
    • Manage Datasets
  • Data in PIC-SURE
    • Data Organization in BDC-PIC-SURE
      • BDC-PIC-SURE Data Format
    • Available Data & Managing Data Access
      • Publicly Available Datasets
      • TOPMed and TOPMed Related Datasets
        • Harmonized Data (TOPMed DCC Harmonized Clinical Variables)
      • BioLINCC Datasets
      • CONNECTS Datasets
  • Prepare for Data Analysis Using the PIC-SURE API
    • What is the PIC-SURE API?
    • PIC-SURE Personal Access Token
    • Analysis in the BioData Catalyst Ecosystem
      • BDC Powered by Seven Bridges
      • BDC Powered by Terra
    • Data Dictionaries via PIC-SURE API
    • More information about the PIC-SURE API
  • Citation and Acknowledgement of BioData Catalyst
  • Release Notes
    • Release Notes
      • 2025 June 4 Release
      • 2025 May 22 Release
      • 2025 May 8 Release
      • 2025 April 3 Release
      • 2025 March 5 Release
      • 2025 February 10 Release
      • 2024 Release Notes
        • 2024 December 19 Release
        • 2024 November 21 Release
        • 2024 November 4 Release
        • 2024 October 3 Release
        • 2024 September 5 Release
        • 2024 August 20 Release
        • 2024 August 1 Release
        • 2024 June 18 Release
        • 2024 May 29/30 Release
        • 2024 May 10/14 Release
        • 2024 March 26/28 Release
        • 2024 February 20/22 Release
        • 2024 January 30/31
        • 2024 January 16 Release
        • 2024 June 27 Release
      • 2023 Release Notes
        • 2023 December 12/14 Release
        • 2023 November 17 Release
        • 2023 October 23/31 Releases
        • 2023 October 13 Release
        • 2023 October 6 Release
        • 2023 September 28 Release
        • 2023 August 29 Release
        • 2023 July 27 Release
        • 2023 May 25 Release
        • 2023 March 30 Release
        • 2023 January 26 Release
  • Video Tutorials
    • Introduction to BioData Catalyst Powered by PIC-SURE
    • Basics: Finding Variables
    • Basics: Applying a Filter on a Variable
    • Basics: Editing a Variable Filter
    • PIC-SURE Open Access: Interpreting the Results
    • PIC-SURE Authorized Access: Add Variables to Export
    • PIC-SURE Authorized Access: Applying a Genomic Filter
    • PIC-SURE Authorized Access: Variable Distributions Tool
    • PIC-SURE Open Application Programming Interface (API)
  • Appendix
    • Glossary
    • Appendix 1: BDC Identifiers - dbGaP, TOPMed, and PIC-SURE
    • Appendix 2: Table of TOPMed DCC Harmonized Variables in PIC-SURE
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  1. Browse

Features of Browse

PreviousBrowse All DataNextLog in to Explore

Last updated 8 months ago

Browse allows you to search any clinical variable available in PIC-SURE. Queries will return obfuscated aggregate counts per study and consent. There are some features specific to Browse, which are outlined below.

A. Some variables are not filterable to protect participant data. Browse does not allow the filtering of clinical variables that contain potentially sensitive information. These variables are known as stigmatizing variables which fall into the following categories:

  • Mental health diagnoses, history, and treatment

  • Illicit drug use history

  • Sexually transmitted disease diagnoses, history, and treatment

  • Sexual history

  • Intellectual achievement, ability, and educational attainment

  • Direct or surrogate identifiers of legal status

B. Data obfuscation. Because participant-level data are not available in Browse, the aggregate counts are obfuscated to anonymize the data. This means that:

  • If the participant count is between zero and nine, it will be shown as < 10.

  • If the participant count is ten or greater, the true count will be shown.

  • If the participant count is ten or greater, but the count consists of subgroups (such as consent groups) that are between zero and nine, the count will be obfuscated by +/- 3.

C. Tool suite. The Tool Suite contains tools that can be used to explore filtered cohorts of interest.

  • Coming soon! Participant Count by Study: The filtered number of participants that match the query criteria is shown broken down by study and consent group. If there are no filters added to the query, the counts displayed reflect the total number of participants in the study. Additionally, users can see if they do or do not have access to specific studies.

  • Variable Distributions: View the distributions of query variables based on the filtered cohort. Note that there is a limit to the number of variable distributions that can be viewed at a given time. For categorical variables with more than seven categories included in the query, seven categories will be displayed in the bar chart plus an additional "Other" bar that combines all other categories. Additionally, the visualizations will be obfuscated to protect participant-level data. This mimics the data obfuscation applied to the aggregate counts. This means that:

    • If the total count of the cohort is obfuscated by +/- 3:

      • Counts between 0 and 9 are displayed as "< 10".

      • Counts greater than or equal to 10 are obfuscated by +/- 3.

For more information about stigmatizing variables and the identification process, please refer to the documentation and code on the .

Some additional variables are not filterable to protect participant anonymity. You can submit a request for our team to review a variable's status using .

BioData Catalyst Powered by PIC-SURE Stigmatizing Variables GitHub repository
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