NHLBI BioData Catalyst® Powered by PIC-SURE
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  • NHLBI BioData Catalyst® Powered by PIC-SURE User Guidechevron-right
  • Introduction to PIC-SURE
    • General Layout
    • Discover vs. Explore
  • Discover
    • Discover All Data
    • Features of Discover
    • Building a Cohort in Discover
  • Explore
    • Log in to Explore
    • Features of Explore
    • Prepare for Analysischevron-right
    • Building a Cohort in Explore
    • Manage Datasets
  • Data in PIC-SURE
    • Data Organization in BDC-PIC-SUREchevron-right
    • Available Data & Managing Data Accesschevron-right
  • Prepare for Data Analysis Using the PIC-SURE API
    • What is the PIC-SURE API?
    • PIC-SURE Personal Access Token
    • Analysis in the BioData Catalyst Ecosystemchevron-right
    • Data Dictionaries via PIC-SURE API
    • More information about the PIC-SURE API
  • Citation and Acknowledgement of BioData Catalyst
  • Release Notes
    • Release Noteschevron-right
  • Video Tutorials
    • Introduction to BioData Catalyst Powered by PIC-SURE
    • Basics: Finding Variables
    • Basics: Applying a Filter on a Variable
    • Basics: Editing a Variable Filter
    • PIC-SURE Open Access: Interpreting the Results
    • PIC-SURE Authorized Access: Add Variables to Export
    • PIC-SURE Authorized Access: Applying a Genomic Filter
    • PIC-SURE Authorized Access: Variable Distributions Tool
    • PIC-SURE Open Application Programming Interface (API)
  • Appendix
    • Glossary
    • Appendix 1: BDC Identifiers - dbGaP, TOPMed, and PIC-SURE
    • Appendix 2: Table of TOPMed DCC Harmonized Variables in PIC-SURE
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  1. Prepare for Data Analysis Using the PIC-SURE API

More information about the PIC-SURE API

To learn more about the PIC-SURE API, please refer to the following links.

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Links to PIC-SURE API GitHub repositories

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PIC-SURE API

LogoGitHub - hms-dbmi/pic-sure: PIC-SURE APIGitHubchevron-right

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Python Clients & Adapters

PIC-SURE Python Client

LogoGitHub - hms-dbmi/pic-sure-python-client: A client library for interacting with the PIC-SURE APIGitHubchevron-right

PIC-SURE HPDS Python Client

LogoGitHub - hms-dbmi/pic-sure-python-adapter-hpds: A Python client library for PIC-SURE-HPDS resourcesGitHubchevron-right

PIC-SURE HPDS Python Adapter for BDC

LogoGitHub - hms-dbmi/pic-sure-biodatacatalyst-python-adapter-hpds: A Python PIC-SURE adapter library for use in BioData Catalyst's Jupyter notebook environmentGitHubchevron-right

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R Clients & Adapters

PIC-SURE HPDS R Client

LogoGitHub - hms-dbmi/pic-sure-r-adapter-hpds: Adapter library for PIC-SURE HPDS Resources (in R language)GitHubchevron-right

PIC-SURE HPDS R Client documentation

Logopic-sure-r-adapter-hpds/picsure_1.1.1.pdf at main · hms-dbmi/pic-sure-r-adapter-hpdsGitHubchevron-right

PreviousData Dictionaries via PIC-SURE APIchevron-leftNextCitation and Acknowledgement of BioData Catalystchevron-right

Last updated 1 year ago

  • Links to PIC-SURE API GitHub repositories
  • PIC-SURE API
  • Python Clients & Adapters
  • R Clients & Adapters