NHLBI BioData Catalyst® Powered by PIC-SURE
  • NHLBI BioData Catalyst® Powered by PIC-SURE User Guide
    • Frequently Asked Questions
  • Introduction to PIC-SURE
    • General Layout
    • Browse vs. Explore
  • Browse
    • Browse All Data
    • Features of Browse
  • Explore
    • Log in to Explore
    • Features of Explore
      • Prepare for Analysis
      • PFB Handoff to BioData Catalyst Powered by Terra
    • Manage Datasets
  • Data in PIC-SURE
    • Data Organization in BDC-PIC-SURE
      • BDC-PIC-SURE Data Format
    • Available Data & Managing Data Access
      • Publicly Available Datasets
      • TOPMed and TOPMed Related Datasets
        • Harmonized Data (TOPMed DCC Harmonized Clinical Variables)
      • BioLINCC Datasets
      • CONNECTS Datasets
  • Prepare for Data Analysis Using the PIC-SURE API
    • What is the PIC-SURE API?
    • PIC-SURE Personal Access Token
    • Analysis in the BioData Catalyst Ecosystem
      • BDC Powered by Seven Bridges
      • BDC Powered by Terra
    • Data Dictionaries via PIC-SURE API
    • More information about the PIC-SURE API
  • Citation and Acknowledgement of BioData Catalyst
  • Release Notes
    • Release Notes
      • 2025 May 8 Release
      • 2025 April 3 Release
      • 2025 March 5 Release
      • 2025 February 10 Release
      • 2024 Release Notes
        • 2024 December 19 Release
        • 2024 November 21 Release
        • 2024 November 4 Release
        • 2024 October 3 Release
        • 2024 September 5 Release
        • 2024 August 20 Release
        • 2024 August 1 Release
        • 2024 June 18 Release
        • 2024 May 29/30 Release
        • 2024 May 10/14 Release
        • 2024 March 26/28 Release
        • 2024 February 20/22 Release
        • 2024 January 30/31
        • 2024 January 16 Release
        • 2024 June 27 Release
      • 2023 Release Notes
        • 2023 December 12/14 Release
        • 2023 November 17 Release
        • 2023 October 23/31 Releases
        • 2023 October 13 Release
        • 2023 October 6 Release
        • 2023 September 28 Release
        • 2023 August 29 Release
        • 2023 July 27 Release
        • 2023 May 25 Release
        • 2023 March 30 Release
        • 2023 January 26 Release
  • Video Tutorials
    • Introduction to BioData Catalyst Powered by PIC-SURE
    • Basics: Finding Variables
    • Basics: Applying a Filter on a Variable
    • Basics: Editing a Variable Filter
    • PIC-SURE Open Access: Interpreting the Results
    • PIC-SURE Authorized Access: Add Variables to Export
    • PIC-SURE Authorized Access: Applying a Genomic Filter
    • PIC-SURE Authorized Access: Variable Distributions Tool
    • PIC-SURE Open Application Programming Interface (API)
  • Appendix
    • Glossary
    • Appendix 1: BDC Identifiers - dbGaP, TOPMed, and PIC-SURE
    • Appendix 2: Table of TOPMed DCC Harmonized Variables in PIC-SURE
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  1. Prepare for Data Analysis Using the PIC-SURE API
  2. Analysis in the BioData Catalyst Ecosystem

BDC Powered by Seven Bridges

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Last updated 8 months ago

Publicly available example code that demonstrates the PIC-SURE API is available on BDC-Seven Bridges.

After logging into the platform, select the Public Resources tab at the top and choose Projects. You will find a project called that has example code for Python and R Jupyter Notebooks as well as RStudio examples.

To find these examples, go to the Data Studio tab of the project.

The project also contains a simple point-and-click workflow interface for you to easily import CSV files from PIC-SURE. All that is needed for this workflow is your PIC-SURE personal access token and dataset ID. To find this example, go to the Tasks tab of the project.

Note: The project must have network access to run the PIC-SURE examples on Seven Bridges. To ensure this, go to the Settings tab of the project and select "Allow network access".

Data Export from PIC-SURE UI